The Human Papillomaviruses Compendium On Line

Archive Disclaimer

The original Human Papillomaviruses Database was developed and hosted by the Los Alamos National Laboratory (LANL) between 1994 and 1999 with funding from the National Institute of Allergy and Infectious Diseases (NIAID). Although the data presented on these web pages is outdated, it is still useful as a reference to the HPV community. These archive pages host the 1994-1999 LANL Human Papillomaviruses Database data in their original state. The data on these pages is not linked to the more up-to-date PaVE databases. To request more information or additional features on the PaVE database, contact pavesupport@niaid.nih.gov.

You may now view and print out all or parts of the Human Papillomaviruses Compendium for the years 1994, 1995, 1996, 1997. Some of the information in these documents is updated each year -- the alignments, for example -- while other information, such as GenBank-style sequences, are only published once.

These four documents are stored in Adobe Acrobat PDF format. "PDF" (Portable Document Format) files retain all the typographical qualities of the original document -- fonts, tables, illustrations. They can be viewed and printed by anyone using a freely available copy of the Adobe Acrobat viewer which is available for Macintosh, UNIX, and DOS computers. Your free copy of the Acrobat viewer is available from Adobe Systems.

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1994

CONTENTS

Please select from the following list the parts of the Human Papillomaviruses 1994 Compendium you would like to acquire. The size of each file follows its name. All these documents are in Adobe Acrobat format. To view them get a copy of the Adobe Acrobat viewer here.

Introduction, Glossary, and Landmarks of the Genome

PART I. HPV and Animal PV Nucleotide Sequences in GenBank style

PART II. Nucleotide and Protein Alignments of E6, E7, E1, E2, E4, E5, L2, L1, and LCR

Note: conventions and symbols used in the alignments are described in the Introduction.

PART III. Phylogenetic Trees, Linear Correlation, Synonymous/Nonsynonymous Substitution, Protein Information Density

PART IV. Nucleotide Sequences of Cellular Proteins Affected by Papillomaviruses

PART V. Map of Atlas File Server and References for 1992, 1993, and 1994)



1995

CONTENTS

Please select from the following list the parts of the Human Papillomaviruses 1995 Compendium you would like to acquire. The size of each file follows its name. All these documents are in Adobe Acrobat format. To view them get a copy of the Adobe Acrobat viewer here.

Introduction, Glossary, and Landmarks of the Genome

PART I. HPV and Animal PV Nucleotide Sequences in GenBank style

PART II. Nucleotide and Protein Alignments of E6, E7, E1, E2, E4, E5, L2, L1, and LCR

Note: conventions and symbols used in the alignments are described in the Introduction.

PART III. Genome and RNA transcript maps, reviews of LCR, E6, E7, L1, L2, variation in PVs, patterns and similarities, and recombination.

PART IV. Nucleotide Sequences of Cellular Proteins Affected by Papillomaviruses

PART V. Using the World Wide Web and HPV References (1994-95)

1996

CONTENTS

Please select from the following list the parts of the Human Papillomaviruses 1996 Compendium you would like to acquire. The size of each file follows its name. All these documents are in Adobe Acrobat format. To view them get a copy of the Adobe Acrobat viewer here.

Introduction, Glossary, and Landmarks of the Genome

PART I. HPV and Animal PV Nucleotide Sequences in GenBank style

PART II. Nucleotide and Protein Alignments of E6, E7, E1, E2, E4, E5, L2, L1, and LCR

Note: conventions and symbols used in the alignments are described in the Introduction. Hidden Markov Methods are described in the Farmer and Myers article, "PV Alignments and Structure Predictions" in Part III.

PART III. Genome and mRNA transcript maps, reviews of E2, E4, and E5 proteins, HPV prevalence and Hidden Markov Methods.

PART IV. Nucleotide Sequences of Cellular Proteins Affected by Papillomaviruses

PART V. Using the World Wide Web and HPV References (1995-96)

1997

CONTENTS

Please select from the following list the parts of the Human Papillomaviruses 1997 Compendium you would like to acquire. The size of each file follows its name. All these documents are in Adobe Acrobat format. To view them get a copy of the Adobe Acrobat viewer here.

Introduction, Glossary, and Landmarks of the Genome

PART I. HPV and Animal PV Nucleotide Sequences in GenBank style

PART II. Nucleotide and Protein Alignments of E6, E7, E1, E2, E4, E5, L2, L1, L1 consensus primer region, and LCR

Note: conventions and symbols used in the alignments are described in the Introduction. Hidden Markov Methods are described in the Farmer and Myers article, PV Alignments and Structure Predictions (36 Kbytes) that appeared in the 96 compendium.

PART III. Genome and mRNA transcript maps, reviews of E1, E2, and E7 proteins, post-transcriptional regulation, animal papillomaviruses, and sequencing errors in PVs.

PART IV. Nucleotide Sequences of Cellular Proteins Affected by Papillomaviruses

PART V. HPV References (1996-97)